I do my S1000 all the time with a 5D mounted. 26+ pounds total AUW.
Gimbal doesnt need power whilst calibrating your compass.
can't you put the Gimbal on after calibrating the compass at the take off site? especially if it has a quick detach mount or perhaps you could use a couple of those velcro straps, the type made to bundle cables together to hold the gimbal whilst you calibrate.
I tend to calibrate the compass on my SkyJib with the Zenmuse powered down and then power it up afterwards, never had an issue thus far with the Zenmuse initializing properly.